STRINGSTRING
PFL_4708 PFL_4708 PFL_4706 PFL_4706 PFL_4704 PFL_4704 PFL_6233 PFL_6233 PFL_4705 PFL_4705 PFL_4703 PFL_4703 PFL_4700 PFL_4700 PFL_4707 PFL_4707 PFL_6232 PFL_6232 dsbD dsbD PFL_4702 PFL_4702
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4708Thioredoxin domain protein, DsbA family; Identified by match to protein family HMM PF01323. (219 aa)    
Predicted Functional Partners:
PFL_4706
Conjugative transfer ATPase, PFL_4706 family; Identified by match to protein family HMM TIGR03744.
 
   
 0.929
PFL_4704
Integrating conjugative element protein, PFL_4704 family; Identified by similarity to GB:AAP22570.1; match to protein family HMM TIGR03749.
 
     0.921
PFL_6233
Conjugative transfer region lipoprotein, TIGR03751 family; Identified by match to protein family HMM TIGR03751.
 
     0.920
PFL_4705
Integrating conjugative element protein, PFL_4705 family; Identified by match to protein family HMM TIGR03752.
 
  
 0.918
PFL_4703
Integrating conjugative element protein, PFL_4703 family; Identified by match to protein family HMM TIGR03746.
 
     0.913
PFL_4700
Integrative conjugative element protein, RAQPRD family; Identified by match to protein family HMM PF09686; match to protein family HMM TIGR01690.
 
     0.889
PFL_4707
Conserved hypothetical protein.
       0.802
PFL_6232
Conjugative transfer region protein, TIGR03750 family; Identified by match to protein family HMM TIGR03750.
       0.783
dsbD
Thiol:disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily.
  
 
 0.766
PFL_4702
Integrating conjugative element membrane protein, PFL_4702 family; Identified by match to protein family HMM TIGR03745.
       0.748
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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