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PFL_4727 PFL_4727 PFL_4728 PFL_4728 prfA prfA PFL_4726 PFL_4726 PFL_4725 PFL_4725 PFL_4729 PFL_4729 plsX plsX PFL_4730 PFL_4730 tmk tmk atpE atpE PFL_2465 PFL_2465
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_4727Methyltransferase, HemK family; Identified by match to protein family HMM PF01170; match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. (326 aa)    
Predicted Functional Partners:
PFL_4728
Conserved hypothetical protein.
 
    0.905
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
 
 0.882
PFL_4726
Glutamate-cysteine ligase, type2 family protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
  
    0.794
PFL_4725
Glutamyl aminopeptidase, M42 family; Identified by match to protein family HMM PF05343.
  
    0.730
PFL_4729
Conserved hypothetical protein; Identified by match to protein family HMM PF06930.
  
    0.481
plsX
Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
   
    0.479
PFL_4730
Putative lipoprotein.
 
    0.464
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
   0.448
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   0.439
PFL_2465
Cytidyltransferase domain protein; Identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125.
  
    0.436
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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