STRINGSTRING
slyX slyX PFL_4772 PFL_4772 PFL_6006 PFL_6006 PFL_0533 PFL_0533 ndpA_1 ndpA_1 ndpA_2 ndpA_2 pasA pasA PFL_1749 PFL_1749 PFL_1821 PFL_1821 PFL_5089 PFL_5089 PFL_2635 PFL_2635
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slyXIdentified by match to protein family HMM PF04102; Belongs to the SlyX family. (68 aa)    
Predicted Functional Partners:
PFL_4772
Histidine triad domain protein; Identified by match to protein family HMM PF01230.
 
    0.907
PFL_6006
Conserved hypothetical protein.
  
     0.563
PFL_0533
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
  
     0.524
ndpA_1
Nucleoid-associated protein NdpA; Identified by match to protein family HMM PF04245.
  
   
 0.515
ndpA_2
Nucleoid-associated protein NdpA; Identified by match to protein family HMM PF04245.
  
   
 0.502
pasA
PasA protein; Identified by similarity to GB:AAZ03608.1.
 
     0.468
PFL_1749
Conserved hypothetical protein.
  
     0.461
PFL_1821
Conserved hypothetical protein.
  
     0.449
PFL_5089
Conserved hypothetical protein; Identified by match to protein family HMM PF06295.
  
     0.440
PFL_2635
Identified by match to protein family HMM PF00582.
  
     0.435
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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