STRINGSTRING
oprD oprD PFL_4993 PFL_4993 PFL_0521 PFL_0521 PFL_5908 PFL_5908 sulA sulA PFL_3405 PFL_3405 oprC oprC PFL_1768 PFL_1768 PFL_1874 PFL_1874 oprB oprB PFL_2201 PFL_2201
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprDOuter membrane porin OprD; Identified by similarity to SP:P32722; match to protein family HMM PF03573. (446 aa)    
Predicted Functional Partners:
PFL_4993
Outer membrane porin, OprD family; Identified by similarity to SP:P32722; match to protein family HMM PF03573.
  
  
 
0.918
PFL_0521
Identified by match to protein family HMM PF02585.
  
     0.674
PFL_5908
SdiA-regulated domain protein; Identified by match to protein family HMM PF06977.
  
     0.630
sulA
Cell division inhibitor SulA; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division.
  
     0.584
PFL_3405
Conserved hypothetical protein; Identified by match to protein family HMM PF08980.
  
     0.559
oprC
TonB-dependent outermembrane copper receptor OprC; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778.
  
   
 0.557
PFL_1768
Conserved hypothetical protein.
  
     0.556
PFL_1874
Conserved TM helix-containing protein; Identified by match to protein family HMM PF05552.
  
     0.540
oprB
Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.
      
 0.533
PFL_2201
Conserved hypothetical protein.
  
   
 0.530
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.