STRINGSTRING
dctB dctB dctD dctD PFL_0300 PFL_0300 PFL_0301 PFL_0301 PFL_2226 PFL_2226 PFL_4876 PFL_4876 PFL_1106 PFL_1106 fitH fitH PFL_2516 PFL_2516 citA citA PFL_1441 PFL_1441
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctBC4-dicarboxylate transport sensor protein DctB; Identified by similarity to SP:P13633; match to protein family HMM PF00512; match to protein family HMM PF02518. (588 aa)    
Predicted Functional Partners:
dctD
C4-dicarboxylate transport transcriptional regulatory protein DctD; Identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954.
 0.993
PFL_0300
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728.
 0.971
PFL_0301
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
  
 
0.919
PFL_2226
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 0.713
PFL_4876
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728.
 
 0.702
PFL_1106
Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 
 0.659
fitH
Response regulator FitH; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91234.1; match to protein family HMM PF00072.
 
 
 0.654
PFL_2516
Sensory box histidine kinase/response regulator; Identified by similarity to SP:P16575; match to protein family HMM PF00072; match to protein family HMM PF00497; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
 
 
 0.583
citA
Putative MFS transporter, citrate:H+ symporter CitA; Identified by similarity to SP:P07661; match to protein family HMM PF00083; match to protein family HMM PF07690.
     
 0.576
PFL_1441
DNA-binding response regulator; Identified by similarity to SP:P22104; match to protein family HMM PF00072; match to protein family HMM PF00486.
  
 
 
 0.575
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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