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PFL_4814 PFL_4814 PFL_4815 PFL_4815 PFL_4275 PFL_4275 PFL_2280 PFL_2280 PFL_3316 PFL_3316 PFL_0787 PFL_0787 PFL_3433 PFL_3433 PFL_3943 PFL_3943 PFL_1842 PFL_1842 PFL_1846 PFL_1846 arcA arcA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4814NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01370. (204 aa)    
Predicted Functional Partners:
PFL_4815
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
  
    0.639
PFL_4275
Conserved hypothetical protein.
   
    0.599
PFL_2280
Permease family protein; Identified by similarity to SP:P45468; match to protein family HMM PF03773.
   
    0.577
PFL_3316
3-demethylubiquinone-9 3-methyltransferase domain protein; Identified by match to protein family HMM PF06983.
  
    0.537
PFL_0787
Transcriptional regulator, HxlR family; Identified by similarity to SP:P37486; match to protein family HMM PF01638.
 
  
 0.506
PFL_3433
Transcriptional regulator, HxlR family; Identified by match to protein family HMM PF01638.
 
  
 0.497
PFL_3943
Transcriptional regulator, HxlR family; Identified by match to protein family HMM PF01638.
 
  
 0.490
PFL_1842
Conserved hypothetical protein.
   
    0.487
PFL_1846
Conserved hypothetical protein.
   
    0.487
arcA
Arginine deiminase; Identified by similarity to GB:CAA04682.1; match to protein family HMM PF02274; match to protein family HMM TIGR01078.
   
    0.487
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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