PFL_4832 protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PFL_4832

Conserved hypothetical protein. (74 aa)

Predicted Functional Partners:

inaA

0.833

PFL_4834

0.815

colR

0.522

colS

0.492

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_4832	PFL_4834	PFL_4832	PFL_4834	Conserved hypothetical protein.	Methyltransferase domain protein; Identified by match to protein family HMM PF08241.	0.815
PFL_4832	colR	PFL_4832	PFL_4836	Conserved hypothetical protein.	DNA-binding response regulator ColR; Identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.522
PFL_4832	colS	PFL_4832	PFL_4835	Conserved hypothetical protein.	Sensor histidine kinase ColS; Identified by similarity to GB:CAA70932.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.492
PFL_4832	inaA	PFL_4832	PFL_4833	Conserved hypothetical protein.	InaA protein; Identified by similarity to SP:P27294; match to protein family HMM PF06293.	0.833
PFL_4834	PFL_4832	PFL_4834	PFL_4832	Methyltransferase domain protein; Identified by match to protein family HMM PF08241.	Conserved hypothetical protein.	0.815
PFL_4834	colR	PFL_4834	PFL_4836	Methyltransferase domain protein; Identified by match to protein family HMM PF08241.	DNA-binding response regulator ColR; Identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.527
PFL_4834	colS	PFL_4834	PFL_4835	Methyltransferase domain protein; Identified by match to protein family HMM PF08241.	Sensor histidine kinase ColS; Identified by similarity to GB:CAA70932.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.724
PFL_4834	inaA	PFL_4834	PFL_4833	Methyltransferase domain protein; Identified by match to protein family HMM PF08241.	InaA protein; Identified by similarity to SP:P27294; match to protein family HMM PF06293.	0.974
colR	PFL_4832	PFL_4836	PFL_4832	DNA-binding response regulator ColR; Identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	Conserved hypothetical protein.	0.522
colR	PFL_4834	PFL_4836	PFL_4834	DNA-binding response regulator ColR; Identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	Methyltransferase domain protein; Identified by match to protein family HMM PF08241.	0.527
colR	colS	PFL_4836	PFL_4835	DNA-binding response regulator ColR; Identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensor histidine kinase ColS; Identified by similarity to GB:CAA70932.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.986
colR	inaA	PFL_4836	PFL_4833	DNA-binding response regulator ColR; Identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	InaA protein; Identified by similarity to SP:P27294; match to protein family HMM PF06293.	0.614
colS	PFL_4832	PFL_4835	PFL_4832	Sensor histidine kinase ColS; Identified by similarity to GB:CAA70932.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Conserved hypothetical protein.	0.492
colS	PFL_4834	PFL_4835	PFL_4834	Sensor histidine kinase ColS; Identified by similarity to GB:CAA70932.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Methyltransferase domain protein; Identified by match to protein family HMM PF08241.	0.724
colS	colR	PFL_4835	PFL_4836	Sensor histidine kinase ColS; Identified by similarity to GB:CAA70932.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	DNA-binding response regulator ColR; Identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.986
colS	inaA	PFL_4835	PFL_4833	Sensor histidine kinase ColS; Identified by similarity to GB:CAA70932.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	InaA protein; Identified by similarity to SP:P27294; match to protein family HMM PF06293.	0.790
inaA	PFL_4832	PFL_4833	PFL_4832	InaA protein; Identified by similarity to SP:P27294; match to protein family HMM PF06293.	Conserved hypothetical protein.	0.833
inaA	PFL_4834	PFL_4833	PFL_4834	InaA protein; Identified by similarity to SP:P27294; match to protein family HMM PF06293.	Methyltransferase domain protein; Identified by match to protein family HMM PF08241.	0.974
inaA	colR	PFL_4833	PFL_4836	InaA protein; Identified by similarity to SP:P27294; match to protein family HMM PF06293.	DNA-binding response regulator ColR; Identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.614
inaA	colS	PFL_4833	PFL_4835	InaA protein; Identified by similarity to SP:P27294; match to protein family HMM PF06293.	Sensor histidine kinase ColS; Identified by similarity to GB:CAA70932.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.790

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About