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rnfB rnfB PFL_4845 PFL_4845 rnfG rnfG rnfD rnfD PFL_4849 PFL_4849 nth nth rnfH rnfH metG metG sspB sspB hcnA hcnA PFL_4851 PFL_4851
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rnfBElectron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. (401 aa)    
Predicted Functional Partners:
PFL_4845
Putative membrane protein; Belongs to the NqrDE/RnfAE family.
 
 
 0.986
rnfG
Electron transport complex, RnfABCDGE type, G subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
 
 0.978
rnfD
Electron transport complex, RnfABCDGE type, D subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
 
 
 0.975
PFL_4849
Putative membrane protein; Belongs to the NqrDE/RnfAE family.
 
 
 0.975
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
  
 0.885
rnfH
Conserved hypothetical protein; Identified by match to protein family HMM PF03658; Belongs to the UPF0125 (RnfH) family.
 
   
 0.813
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.733
sspB
Identified by similarity to SP:P25663; match to protein family HMM PF04386.
  
     0.660
hcnA
Hydrogen cyanide synthase HcnA; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAF21028.1; match to protein family HMM PF00111.
 
 
 
 0.593
PFL_4851
Conserved hypothetical protein.
       0.577
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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