STRINGSTRING
bfr_1 bfr_1 PFL_0613 PFL_0613 PFL_4858 PFL_4858 hemH hemH bfr_2 bfr_2 hemO hemO PFL_3251 PFL_3251 PFL_1643 PFL_1643 PFL_1973 PFL_1973 radA radA PFL_0093 PFL_0093
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfr_1Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (157 aa)    
Predicted Functional Partners:
PFL_0613
Identified by match to protein family HMM PF00210; match to protein family HMM PF02915.
  
  
  0.947
PFL_4858
Putative bacterioferritin-associated ferredoxin; Identified by similarity to SP:P0AE56; match to protein family HMM PF04324.
 
 
 0.934
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.914
bfr_2
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
 
  
0.910
hemO
Heme oxygenase HemO; See Kaur et. al. 2009 (PMID: 18990702) for more information; identified by similarity to GB:AAG04061.1; match to protein family HMM PF01126.
     
 0.901
PFL_3251
CHASE3/GAF sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF05227.
   
  
 0.623
PFL_1643
Putative anti-anti-sigma factor; Identified by match to protein family HMM PF01740.
   
  
 0.498
PFL_1973
Putative anti-anti-sigma factor; Identified by match to protein family HMM PF01740.
   
  
 0.498
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
      
 0.433
PFL_0093
Conserved hypothetical protein; Identified by match to protein family HMM PF07043.
 
    0.415
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.