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gltK gltK gltL gltL gltI gltI gltJ gltJ PFL_0248 PFL_0248 PFL_2360 PFL_2360 PFL_1041 PFL_1041 PFL_0417 PFL_0417 PFL_2194 PFL_2194 PFL_0246 PFL_0246 PFL_2284 PFL_2284
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltKGlutamate/aspartate ABC transporter, permease protein GltK; Identified by similarity to SP:P0AER5; match to protein family HMM PF00528; match to protein family HMM TIGR01726. (223 aa)    
Predicted Functional Partners:
gltL
Glutamate/aspartate ABC transporter, ATP-binding protein GltL; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005.
 0.993
gltI
Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein GltI; Identified by similarity to SP:P37902; match to protein family HMM PF00497.
 
 0.988
gltJ
Glutamate/aspartate ABC transporter, permease protein GltJ; Identified by similarity to SP:P0AER3; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 
0.977
PFL_0248
Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.
 
 0.964
PFL_2360
Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.
 
 0.889
PFL_1041
Lysine-arginine-ornithine binding periplasmic protein; Identified by similarity to SP:P02911; match to protein family HMM PF00497; match to protein family HMM TIGR01096.
 
 0.870
PFL_0417
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005.
 
 0.865
PFL_2194
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52815; match to protein family HMM PF00005.
 
 0.859
PFL_0246
Polar amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P37774; match to protein family HMM PF00005.
 
 0.857
PFL_2284
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P37774; match to protein family HMM PF00005.
 
 0.856
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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