ppk2 protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ppk2

Polyphosphate kinase 2; Identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976; match to protein family HMM TIGR03707. (359 aa)

Predicted Functional Partners:

ppk

0.957

ppa

0.913

PFL_2583

0.900

PFL_0584

0.611

oprG

0.609

PFL_5741

0.606

ccoG_1

0.493

ccoG_2

0.493

hemN

0.482

oprF

0.478

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_0584	PFL_5741	PFL_0584	PFL_5741	Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF08497.	Conserved hypothetical protein.	0.910
PFL_0584	hemN	PFL_0584	PFL_1912	Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF08497.	Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.463
PFL_0584	ppk2	PFL_0584	PFL_4986	Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF08497.	Polyphosphate kinase 2; Identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976; match to protein family HMM TIGR03707.	0.611
PFL_2583	ppa	PFL_2583	PFL_5478	DHH family protein; Identified by match to protein family HMM PF01368.	Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.	0.920
PFL_2583	ppk	PFL_2583	PFL_5984	DHH family protein; Identified by match to protein family HMM PF01368.	Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.	0.900
PFL_2583	ppk2	PFL_2583	PFL_4986	DHH family protein; Identified by match to protein family HMM PF01368.	Polyphosphate kinase 2; Identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976; match to protein family HMM TIGR03707.	0.900
PFL_5741	PFL_0584	PFL_5741	PFL_0584	Conserved hypothetical protein.	Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF08497.	0.910
PFL_5741	ppk2	PFL_5741	PFL_4986	Conserved hypothetical protein.	Polyphosphate kinase 2; Identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976; match to protein family HMM TIGR03707.	0.606
ccoG_1	hemN	PFL_1917	PFL_1912	Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM TIGR02745.	Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.791
ccoG_1	oprG	PFL_1917	PFL_5532	Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM TIGR02745.	Outer membrane protein OprG; See McPhee et. al. 2009 (PMID: 19486157) for more information; identified by similarity to GB:AAG07454.1; match to protein family HMM PF03922.	0.586
ccoG_1	ppk2	PFL_1917	PFL_4986	Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM TIGR02745.	Polyphosphate kinase 2; Identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976; match to protein family HMM TIGR03707.	0.493
ccoG_2	hemN	PFL_2869	PFL_1912	Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745.	Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.713
ccoG_2	oprG	PFL_2869	PFL_5532	Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745.	Outer membrane protein OprG; See McPhee et. al. 2009 (PMID: 19486157) for more information; identified by similarity to GB:AAG07454.1; match to protein family HMM PF03922.	0.583
ccoG_2	ppk2	PFL_2869	PFL_4986	Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745.	Polyphosphate kinase 2; Identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976; match to protein family HMM TIGR03707.	0.493
hemN	PFL_0584	PFL_1912	PFL_0584	Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF08497.	0.463
hemN	ccoG_1	PFL_1912	PFL_1917	Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM TIGR02745.	0.791
hemN	ccoG_2	PFL_1912	PFL_2869	Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745.	0.713
hemN	oprF	PFL_1912	PFL_1876	Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Outer membrane porin OprF; Identified by similarity to SP:P13794; match to protein family HMM PF00691; match to protein family HMM PF02462; match to protein family HMM PF05736.	0.468
hemN	oprG	PFL_1912	PFL_5532	Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Outer membrane protein OprG; See McPhee et. al. 2009 (PMID: 19486157) for more information; identified by similarity to GB:AAG07454.1; match to protein family HMM PF03922.	0.876
hemN	ppk2	PFL_1912	PFL_4986	Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Polyphosphate kinase 2; Identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976; match to protein family HMM TIGR03707.	0.482

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2023

Credits

Access

Info

About