STRINGSTRING
PFL_4993 PFL_4993 oprD oprD PFL_4994 PFL_4994 PFL_0521 PFL_0521 PFL_3546 PFL_3546 PFL_0883 PFL_0883 fusBCD fusBCD pvdF pvdF PFL_1874 PFL_1874 PFL_5908 PFL_5908
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4993Outer membrane porin, OprD family; Identified by similarity to SP:P32722; match to protein family HMM PF03573. (451 aa)    
Predicted Functional Partners:
oprD
Outer membrane porin OprD; Identified by similarity to SP:P32722; match to protein family HMM PF03573.
  
  
 
0.918
PFL_4994
Putative acid phosphatase; Identified by similarity to GB:BAA84942.1; match to protein family HMM PF01569.
       0.596
PFL_0521
Identified by match to protein family HMM PF02585.
  
     0.564
PFL_3546
Conserved hypothetical protein.
  
     0.482
PFL_0883
Conserved hypothetical protein; Identified by match to protein family HMM PF04402.
  
     0.481
fusBCD
Fusaric acid resistance protein FusBCD; Identified by similarity to SP:P24128; match to protein family HMM PF04632.
  
     0.478
pvdF
N(5)-hydroxyornithine transformylase PvdF; See PMID: 11390682; identified by similarity to GB:AAG05784.1.
  
     0.472
PFL_1874
Conserved TM helix-containing protein; Identified by match to protein family HMM PF05552.
  
     0.418
PFL_5908
SdiA-regulated domain protein; Identified by match to protein family HMM PF06977.
  
     0.418
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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