STRINGSTRING
PFL_5116 PFL_5116 PFL_5115 PFL_5115 PFL_0964 PFL_0964 PFL_3533 PFL_3533 PFL_3279 PFL_3279 PFL_3278 PFL_3278 PFL_1724 PFL_1724 PFL_5114 PFL_5114 PFL_1739 PFL_1739 PFL_3927 PFL_3927 alkK alkK
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5116Conserved hypothetical protein; Identified by match to protein family HMM PF06980. (629 aa)    
Predicted Functional Partners:
PFL_5115
Conserved hypothetical protein; Identified by match to protein family HMM PF07044.
 
    0.958
PFL_0964
Conserved hypothetical protein; Identified by match to protein family HMM PF07044.
 
    0.877
PFL_3533
Conserved hypothetical protein; Identified by match to protein family HMM PF07044.
 
    0.877
PFL_3279
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
 
    0.850
PFL_3278
Putative membrane protein.
 
  
 0.792
PFL_1724
Conserved hypothetical protein; Identified by match to protein family HMM PF04654.
  
     0.545
PFL_5114
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF07721.
 
    0.507
PFL_1739
Conserved hypothetical protein.
  
  
 0.503
PFL_3927
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.487
alkK
Putative medium-chain-fatty-acid--CoA ligase; Identified by similarity to SP:Q00594; match to protein family HMM PF00501.
  
    0.454
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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