STRINGSTRING
PFL_5238 PFL_5238 rimI rimI PFL_5239 PFL_5239 PFL_5918 PFL_5918 PFL_0550 PFL_0550 PFL_3405 PFL_3405 PFL_5241 PFL_5241 wapP wapP PFL_5418 PFL_5418 PFL_1329 PFL_1329 PFL_0517 PFL_0517
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5238Conserved hypothetical protein. (266 aa)    
Predicted Functional Partners:
rimI
Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
    0.817
PFL_5239
Conserved hypothetical protein.
 
     0.774
PFL_5918
Conserved hypothetical protein.
 
     0.771
PFL_0550
HAMP domain protein; Identified by match to protein family HMM PF00672.
  
     0.766
PFL_3405
Conserved hypothetical protein; Identified by match to protein family HMM PF08980.
  
     0.766
PFL_5241
Conserved hypothetical protein.
 
   
 0.763
wapP
Putative heptose kinase WapP; Identified by similarity to GB:AAG08393.1; match to protein family HMM PF06293.
  
     0.760
PFL_5418
Conserved hypothetical protein.
  
     0.752
PFL_1329
Outer membrane porin, OprD family; Identified by match to protein family HMM PF03573.
  
     0.746
PFL_0517
Conserved hypothetical protein.
  
     0.740
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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