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psoR psoR PFL_3627 PFL_3627 pedR2 pedR2 gacA gacA PFL_2954 PFL_2954 PFL_1106 PFL_1106 PFL_2709 PFL_2709 gacS gacS pip-2 pip-2 pip pip PFL_4205 PFL_4205
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psoRLuxR family transcriptional regulatory protein PsoR; See Subramoni et al 2011 (PMID: 21531826) for more information; identified by match to protein family HMM PF00196; match to protein family HMM PF03472. (252 aa)    
Predicted Functional Partners:
PFL_3627
Autoinducer-binding transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472.
  
  
  0.960
pedR2
Two-component transcriptional regulator PedR2; Identified by similarity to GB:ABR57220.1; match to protein family HMM PF00072; match to protein family HMM PF00196.
  
  
  0.917
gacA
Response regulator GacA; See Laville et al 1992 (PMID: 1311842) for more information; identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
  
  
 0.915
PFL_2954
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
   
 
 0.689
PFL_1106
Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 
 0.677
PFL_2709
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
   
 
 0.558
gacS
Sensor protein GacS; See Corbell and Loper 1995 (PMID:7592389) for more information; identified by similarity to SP:P48027; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
   
 
 0.558
pip-2
Putative proline imino peptidase; See Subramoni et al 2011 (PMID: 21531826) for more information; identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250.
       0.551
pip
Prolyl aminopeptidase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249; Belongs to the peptidase S33 family.
      
 0.531
PFL_4205
Putative sensor histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 
 0.515
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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