STRINGSTRING
PFL_5384 PFL_5384 PFL_5385 PFL_5385 aroE-2 aroE-2 PFL_2722 PFL_2722 PFL_2450 PFL_2450 PFL_5391 PFL_5391 pobA pobA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
PFL_5384Transcriptional regulator, TetR family; Identified by similarity to GB:ABC42333.1; match to protein family HMM PF00440. (225 aa)    
Predicted Functional Partners:
PFL_5385
Putative 4-hydroxyphenylpyruvate dioxygenase; Identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM PF01261.
 
     0.858
aroE-2
Quinate/shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
     0.578
PFL_2722
Putative triacylglycerol lipase; Identified by match to protein family HMM PF07859.
    
 0.476
PFL_2450
FAD dependent oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF07992.
  
     0.472
PFL_5391
Conserved hypothetical protein; Identified by match to protein family HMM PF01261.
  
     0.443
pobA
4-hydroxybenzoate 3-monooxygenase; Identified by similarity to SP:P20586; match to protein family HMM PF01494; match to protein family HMM TIGR02360.
  
   
 0.429
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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