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pcaG_2 pcaG_2 pobA pobA pcaB pcaB pcaH_2 pcaH_2 pcaH_1 pcaH_1 pcaC pcaC pcaQ pcaQ PFL_5385 PFL_5385 PFL_0890 PFL_0890 pcaD pcaD catA catA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
pcaG_2Protocatechuate 3,4-dioxygenase, alpha subunit; Identified by similarity to SP:P00436; match to protein family HMM PF00775; match to protein family HMM TIGR02423. (201 aa)    
Predicted Functional Partners:
pobA
4-hydroxybenzoate 3-monooxygenase; Identified by similarity to SP:P20586; match to protein family HMM PF01494; match to protein family HMM TIGR02360.
 
  
 0.980
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Identified by similarity to SP:O31385; match to protein family HMM PF00206; match to protein family HMM TIGR02426.
 
 
 0.975
pcaH_2
Protocatechuate 3,4-dioxygenase, beta subunit; Identified by similarity to SP:P00437; match to protein family HMM PF00775; match to protein family HMM TIGR02422.
 
 
0.968
pcaH_1
Protocatechuate 3,4-dioxygenase, beta subunit; Identified by similarity to SP:P15110; match to protein family HMM PF00775; match to protein family HMM TIGR02422.
 
 
0.868
pcaC
4-carboxymuconolactone decarboxylase; Identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425.
 
  
 0.822
pcaQ
Pca operon transcription factor PcaQ; Identified by similarity to SP:P52668; match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424; Belongs to the LysR transcriptional regulatory family.
 
   
 0.809
PFL_5385
Putative 4-hydroxyphenylpyruvate dioxygenase; Identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM PF01261.
 
   
 0.726
PFL_0890
Putative 4-carboxymuconolactone decarboxylase; Identified by similarity to SP:P20370; match to protein family HMM PF02627.
 
  
 0.722
pcaD
3-oxoadipate enol-lactonase; Identified by similarity to GB:AAL02408.1; match to protein family HMM PF00561; match to protein family HMM TIGR02427.
 
   
 0.648
catA
Catechol 1,2-dioxygenase; Identified by similarity to SP:P07773; match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439.
  
   
 0.648
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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