STRINGSTRING
PFL_5398 PFL_5398 PFL_5399 PFL_5399 pcaQ pcaQ PFL_4783 PFL_4783
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_5398Putative neutral zinc metallopeptidase; Identified by match to protein family HMM PF04228. (298 aa)    
Predicted Functional Partners:
PFL_5399
Putative lipoprotein.
       0.802
pcaQ
Pca operon transcription factor PcaQ; Identified by similarity to SP:P52668; match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424; Belongs to the LysR transcriptional regulatory family.
       0.537
PFL_4783
Conserved hypothetical protein; Identified by match to protein family HMM PF05872.
 
     0.505
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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