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PFL_5418 PFL_5418 fieF fieF PFL_5238 PFL_5238 PFL_5918 PFL_5918 PFL_3405 PFL_3405 PFL_1329 PFL_1329 wapP wapP PFL_3077 PFL_3077 PFL_1440 PFL_1440 PFL_3474 PFL_3474 oprE oprE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5418Conserved hypothetical protein. (139 aa)    
Predicted Functional Partners:
fieF
Cation diffusion facilitator family transporter FieF; Identified by similarity to SP:P69380; match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.776
PFL_5238
Conserved hypothetical protein.
  
     0.752
PFL_5918
Conserved hypothetical protein.
  
     0.721
PFL_3405
Conserved hypothetical protein; Identified by match to protein family HMM PF08980.
  
     0.673
PFL_1329
Outer membrane porin, OprD family; Identified by match to protein family HMM PF03573.
  
     0.666
wapP
Putative heptose kinase WapP; Identified by similarity to GB:AAG08393.1; match to protein family HMM PF06293.
  
     0.654
PFL_3077
Outer membrane porin, OprD family; Identified by match to protein family HMM PF03573.
  
     0.631
PFL_1440
Outer membrane porin, OprD family; Identified by similarity to SP:P32722; match to protein family HMM PF03573.
  
     0.629
PFL_3474
Outer membrane porin, OprD family; Identified by similarity to SP:P32722; match to protein family HMM PF03573.
  
     0.610
oprE
Outer membrane porin OprE; Identified by similarity to GB:BAA02207.1; match to protein family HMM PF03573.
  
     0.605
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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