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ubiX ubiX ubiD ubiD ubiA ubiA PFL_5541 PFL_5541 PFL_5965 PFL_5965 PFL_2369 PFL_2369 mpl mpl PFL_5465 PFL_5465 PFL_2685 PFL_2685 PFL_5468 PFL_5468 PFL_5994 PFL_5994
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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ubiXPolyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (210 aa)    
Predicted Functional Partners:
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.
 
 
 0.994
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
 
  
 0.961
PFL_5541
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
    
 0.925
PFL_5965
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein; Identified by similarity to SP:P75728; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988.
    
 0.913
PFL_2369
Conserved hypothetical protein.
     
  0.900
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
  
  
 0.842
PFL_5465
Conserved hypothetical protein; Identified by match to protein family HMM PF07119.
       0.802
PFL_2685
Conserved hypothetical protein; Identified by similarity to GB:BAB53166.1; match to protein family HMM PF04303.
     
  0.800
PFL_5468
Sigma-54 dependent transcriptional regulator; Identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954.
       0.526
PFL_5994
Conserved hypothetical protein; Identified by match to protein family HMM PF09523; match to protein family HMM TIGR02444.
 
     0.400
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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