STRINGSTRING
btuB btuB tonB2 tonB2 metH metH dxs dxs tonB1 tonB1 tonB5 tonB5 PFL_3926 PFL_3926 exbB5 exbB5 tolB tolB PFL_6255 PFL_6255 xseB xseB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
btuBPutative TonB-dependent outermembrane B12 receptor; Receptor; identified by similarity to SP:Q6LLU3; similarity to GB:AAY94717.1; match to protein family HMM PF00593; match to protein family HMM PF07715. (630 aa)    
Predicted Functional Partners:
tonB2
TonB2 protein; See Shirley and Lamont (PMID: 19592589) for more information; identified by similarity to SP:Q9RMT3; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 
 0.616
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
   
 0.595
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.564
tonB1
Periplasmic energy transduction protein TonB1; Identified by similarity to SP:Q05613; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 
 0.556
tonB5
Periplasmic energy transduction protein TonB5; Identified by match to protein family HMM TIGR01352.
 
 
 
 0.540
PFL_3926
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
     0.498
exbB5
TonB system transport protein ExbB5; Identified by match to protein family HMM PF01618.
 
   
 0.448
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 
 0.437
PFL_6255
Conserved hypothetical protein.
  
 
 
 0.426
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.423
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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