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oprG oprG hemN hemN ccoO_1 ccoO_1 ccoO_2 ccoO_2 pap pap ppk2 ppk2 ccoG_1 ccoG_1 ccoG_2 ccoG_2 PFL_5529 PFL_5529 azu azu ccoN_1 ccoN_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
oprGOuter membrane protein OprG; See McPhee et. al. 2009 (PMID: 19486157) for more information; identified by similarity to GB:AAG07454.1; match to protein family HMM PF03922. (232 aa)    
Predicted Functional Partners:
hemN
Coproporphyrinogen dehydrogenase; Identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.876
ccoO_1
Cytochrome c oxidase, cbb3-type, subunit II; Identified by similarity to GB:AAM76065.1; match to protein family HMM PF02433; match to protein family HMM TIGR00781.
 
    0.703
ccoO_2
Cytochrome c oxidase, cbb3-type, subunit II; Identified by similarity to GB:AAM76065.1; match to protein family HMM PF02433; match to protein family HMM TIGR00781.
 
    0.702
pap
polyphosphate:AMP phosphotransferase; Identified by match to protein family HMM PF03976; match to protein family HMM TIGR03708.
   
    0.609
ppk2
Polyphosphate kinase 2; Identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976; match to protein family HMM TIGR03707.
   
    0.609
ccoG_1
Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM TIGR02745.
 
    0.586
ccoG_2
Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745.
 
    0.583
PFL_5529
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
     
 0.572
azu
Azurin; Transfers electrons from cytochrome c551 to cytochrome oxidase.
   
  
 0.570
ccoN_1
Cytochrome c oxidase, cbb3-type, subunit I; Identified by similarity to SP:P98055; match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.546
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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