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PFL_5608 PFL_5608 anmK anmK PFL_6111 PFL_6111 znuA znuA PFL_0563 PFL_0563 amiC amiC PFL_3300 PFL_3300 nlpD nlpD PFL_2958 PFL_2958 mrcA mrcA tyrS tyrS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
PFL_5608Peptidase, M23 family; Identified by match to protein family HMM PF01551; match to protein family HMM PF04225; match to protein family HMM PF08525. (473 aa)    
Predicted Functional Partners:
anmK
anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
    0.889
PFL_6111
Peptidase, M23 family; Identified by match to protein family HMM PF01551.
  
   
 0.714
znuA
High-affinity zinc ABC transporter, periplasmic zinc-binding protein ZnuA; Identified by similarity to SP:P39172; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.696
PFL_0563
N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520.
 
  
 0.641
amiC
N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:Q46929; match to protein family HMM PF01520.
 
  
 0.621
PFL_3300
Putative membrane-bound lytic murein transglycosylase; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474.
 
  
 0.616
nlpD
Putative lipoprotein NlpD; Identified by similarity to SP:P0ADA4; match to protein family HMM PF01476; match to protein family HMM PF01551.
 
  
0.613
PFL_2958
Peptidase M23/LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.
 
  
0.612
mrcA
Penicillin-binding protein 1A; Identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
 
   
 0.609
tyrS
tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
       0.599
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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