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PFL_5613 PFL_5613 PFL_3411 PFL_3411 PFL_1474 PFL_1474 nirK nirK rzxA rzxA PFL_5612 PFL_5612 rzxC rzxC rzxE rzxE rzxF rzxF PFL_4656 PFL_4656 PFL_1477 PFL_1477
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_5613Oxidoreductase, 2-nitropropane dioxygenase family protein; Identified by match to protein family HMM PF03060. (322 aa)    
Predicted Functional Partners:
PFL_3411
Oxidoreductase, 2-nitropropane dioxygenase family; Identified by match to protein family HMM PF03060.
  
  
  0.962
PFL_1474
Oxidoreductase, 2-nitropropane dioxygenase family; Identified by match to protein family HMM PF03060.
  
  
 
0.904
nirK
Nitrite reductase, copper-containing; Identified by similarity to SP:Q06006; match to protein family HMM PF00127; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376; Belongs to the multicopper oxidase family.
     
  0.900
rzxA
Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415.
  
 
 0.728
PFL_5612
Conserved hypothetical protein; Identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701.
       0.690
rzxC
Polyketide synthase RzxC; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF08659.
  
 
 0.670
rzxE
Polyketide synthase RzxE; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801; match to protein family HMM PF08659.
  
 
 0.670
rzxF
Polyketide synthase RzxF; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM PF08659.
  
 
 0.670
PFL_4656
AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668.
  
 
 0.631
PFL_1477
acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
  
 0.595
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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