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PFL_5615 PFL_5615 PFL_3868 PFL_3868 PFL_3223 PFL_3223 PFL_5614 PFL_5614 PFL_5616 PFL_5616 PFL_1364 PFL_1364 PFL_3172 PFL_3172 PFL_2759 PFL_2759 PFL_2760 PFL_2760 rzxA rzxA PFL_1850 PFL_1850
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5615Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (262 aa)    
Predicted Functional Partners:
PFL_3868
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.
 
     0.696
PFL_3223
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.
  
 
 
 0.672
PFL_5614
Conserved hypothetical protein; Identified by match to protein family HMM PF05656.
       0.638
PFL_5616
Histidine triad domain protein; Identified by match to protein family HMM PF01230.
       0.624
PFL_1364
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
  
 
 
 0.599
PFL_3172
Monooxygenase, SsuD family; Identified by similarity to SP:P40402; match to protein family HMM PF00296.
     
 0.582
PFL_2759
Alkaline phosphatase L; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.
     
 0.577
PFL_2760
Conserved hypothetical protein.
     
 0.577
rzxA
Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415.
  
 
 0.576
PFL_1850
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
 
 
 0.567
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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