Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PFL_5614 | PFL_5615 | PFL_5614 | PFL_5615 | Conserved hypothetical protein; Identified by match to protein family HMM PF05656. | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.638 |
PFL_5614 | PFL_5616 | PFL_5614 | PFL_5616 | Conserved hypothetical protein; Identified by match to protein family HMM PF05656. | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | 0.512 |
PFL_5615 | PFL_5614 | PFL_5615 | PFL_5614 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Conserved hypothetical protein; Identified by match to protein family HMM PF05656. | 0.638 |
PFL_5615 | PFL_5616 | PFL_5615 | PFL_5616 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | 0.624 |
PFL_5615 | coq7 | PFL_5615 | PFL_5617 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. | 0.458 |
PFL_5616 | PFL_5614 | PFL_5616 | PFL_5614 | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | Conserved hypothetical protein; Identified by match to protein family HMM PF05656. | 0.512 |
PFL_5616 | PFL_5615 | PFL_5616 | PFL_5615 | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.624 |
PFL_5616 | PFL_6280 | PFL_5616 | PFL_6280 | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | HNH endonuclease domain protein. | 0.415 |
PFL_5616 | coq7 | PFL_5616 | PFL_5617 | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. | 0.558 |
PFL_6280 | PFL_5616 | PFL_6280 | PFL_5616 | HNH endonuclease domain protein. | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | 0.415 |
coq7 | PFL_5615 | PFL_5617 | PFL_5615 | 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.458 |
coq7 | PFL_5616 | PFL_5617 | PFL_5616 | 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | 0.558 |