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yeaG yeaG PFL_5655 PFL_5655 PFL_5654 PFL_5654 PFL_4231 PFL_4231 glgA glgA PFL_0039 PFL_0039 PFL_4769 PFL_4769 cca cca dkgB dkgB PFL_5394 PFL_5394 PFL_1027 PFL_1027
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
yeaGProtein kinase YeaG; Identified by similarity to SP:P0ACY3; match to protein family HMM PF06798; match to protein family HMM PF08298. (640 aa)    
Predicted Functional Partners:
PFL_5655
SpoVR family protein; Identified by similarity to SP:P37875; match to protein family HMM PF04293.
 
  
 0.990
PFL_5654
Conserved hypothetical protein; Identified by match to protein family HMM PF04285; Belongs to the UPF0229 family.
 
  
 0.987
PFL_4231
Conserved hypothetical protein; Identified by match to protein family HMM PF05957.
   
    0.744
glgA
Starch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.676
PFL_0039
Conserved hypothetical protein; Identified by match to protein family HMM PF05957.
   
    0.625
PFL_4769
DNA-binding stress protein, Dps family; Identified by match to protein family HMM PF00210; Belongs to the Dps family.
   
    0.584
cca
Multifunctional CCA protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
     
 0.570
dkgB
2,5-diketo-D-gluconic acid reductase B; Identified by similarity to SP:P30863; match to protein family HMM PF00248.
   
    0.552
PFL_5394
Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM PF00248.
   
    0.552
PFL_1027
Identified by match to protein family HMM PF02562.
   
  
 0.525
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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