STRINGSTRING
PFL_5654 PFL_5654 PFL_5655 PFL_5655 yeaG yeaG cca cca PFL_1027 PFL_1027 PFL_4231 PFL_4231 rpoS rpoS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_5654Conserved hypothetical protein; Identified by match to protein family HMM PF04285; Belongs to the UPF0229 family. (424 aa)    
Predicted Functional Partners:
PFL_5655
SpoVR family protein; Identified by similarity to SP:P37875; match to protein family HMM PF04293.
 
  
 0.994
yeaG
Protein kinase YeaG; Identified by similarity to SP:P0ACY3; match to protein family HMM PF06798; match to protein family HMM PF08298.
 
  
 0.987
cca
Multifunctional CCA protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
       0.631
PFL_1027
Identified by match to protein family HMM PF02562.
   
    0.470
PFL_4231
Conserved hypothetical protein; Identified by match to protein family HMM PF05957.
   
    0.465
rpoS
RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
  
    0.411
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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