STRINGSTRING
PFL_5655 PFL_5655 PFL_5654 PFL_5654 yeaG yeaG cca cca PFL_1392 PFL_1392 PFL_3929 PFL_3929 PFL_4231 PFL_4231 PFL_0096 PFL_0096 trpS trpS ldh ldh blc blc
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5655SpoVR family protein; Identified by similarity to SP:P37875; match to protein family HMM PF04293. (520 aa)    
Predicted Functional Partners:
PFL_5654
Conserved hypothetical protein; Identified by match to protein family HMM PF04285; Belongs to the UPF0229 family.
 
  
 0.994
yeaG
Protein kinase YeaG; Identified by similarity to SP:P0ACY3; match to protein family HMM PF06798; match to protein family HMM PF08298.
 
  
 0.990
cca
Multifunctional CCA protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
     
 0.638
PFL_1392
Conserved hypothetical protein; Identified by similarity to SP:P76402; match to protein family HMM PF07411.
   
  
 0.578
PFL_3929
Conserved hypothetical protein.
   
  
 0.578
PFL_4231
Conserved hypothetical protein; Identified by match to protein family HMM PF05957.
   
    0.551
PFL_0096
Transporter gate domain protein; Identified by match to protein family HMM PF07670.
  
  
 0.536
trpS
tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.530
ldh
Leucine dehydrogenase; Identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812.
   
    0.516
blc
Outer membrane lipoprotein Blc; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
   
  
 0.490
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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