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pqqE pqqE pqqC pqqC pqqD pqqD pqqB_2 pqqB_2 pqqB_1 pqqB_1 pqqM pqqM pedA pedA pedE pedE pedH pedH pedC pedC PFL_2209 PFL_2209
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
pqqECoenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). (389 aa)    
Predicted Functional Partners:
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.982
pqqD
Coenzyme PQQ synthesis protein D; Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway.
 
  
 0.980
pqqB_2
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
  
 0.960
pqqB_1
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
  
 0.917
pqqM
Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326.
  
  
 0.851
pedA
2-phenylethanol ABC efflux transporter, outer membrane protein PedA; Identified by similarity to GB:ABR57217.1; match to protein family HMM TIGR02276; match to protein family HMM TIGR03866.
 
  
 0.832
pedE
Quinoprotein ethanol dehydrogenase PedE; Identified by similarity to GB:ABR57222.1; match to protein family HMM PF01011; match to protein family HMM TIGR03075.
 
  
 0.769
pedH
Quinoprotein ethanol dehydrogenase PedH; Identified by similarity to GB:ABR57227.1; match to protein family HMM PF01011; match to protein family HMM TIGR03075.
 
  
 0.767
pedC
2-phenylethanol ABC efflux transporter, permease protein PedC; Identified by similarity to GB:ABR57215.1; match to protein family HMM PF01061; match to protein family HMM TIGR03861.
 
     0.705
PFL_2209
Conserved hypothetical protein; Identified by match to protein family HMM TIGR03863.
  
     0.697
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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