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PFL_5684 PFL_5684 fadB fadB PFL_1479 PFL_1479 PFL_4798 PFL_4798 nuoD nuoD paaB paaB PFL_2711 PFL_2711 fadB1x fadB1x PFL_3018 PFL_3018 PFL_1836 PFL_1836 etfA etfA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_5684Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (592 aa)    
Predicted Functional Partners:
fadB
Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
 
 0.866
PFL_1479
enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase family protein; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.842
PFL_4798
Identified by match to protein family HMM PF00378.
 
 0.761
nuoD
NADH-quinone oxidoreductase, C/D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 0.726
paaB
Phenylacetate degradation enoyl-CoA hydratase PaaB; Identified by match to protein family HMM PF00378; match to protein family HMM TIGR02280.
  
 0.721
PFL_2711
Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.717
fadB1x
Enoyl-coa hydratase FadB1x; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.717
PFL_3018
Identified by match to protein family HMM PF00378.
  
  0.706
PFL_1836
Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
  
 0.698
etfA
Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012.
 
 
 0.693
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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