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fhuA fhuA PFL_5707 PFL_5707 PFL_5705 PFL_5705 PFL_5704 PFL_5704 PFL_0126 PFL_0126 PFL_3155 PFL_3155 PFL_4626 PFL_4626 pchE pchE PFL_2747 PFL_2747 PFL_3484 PFL_3484 PFL_0989 PFL_0989
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fhuATonB-dependent outermembrane ferrichrome receptor FhuA; Transducer; identified by similarity to SP:P06971; match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783. (809 aa)    
Predicted Functional Partners:
PFL_5707
PepSY-associated membrane protein; Identified by match to protein family HMM PF03929.
 
  
 0.790
PFL_5705
Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to SP:P23485; similarity to PIR:S46356; match to protein family HMM PF04773.
 
   0.764
PFL_5704
RNA polymerase sigma-70 factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.654
PFL_0126
Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to SP:P23485; match to protein family HMM PF04773.
 
 
 0.636
PFL_3155
Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to PIR:S46356; match to protein family HMM PF04773.
 
 
 0.614
PFL_4626
Sigma factor regulatory protein, FecR/PupR family; Identified by match to protein family HMM PF04773.
 
   0.610
pchE
Enantio-pyochelin synthetase E; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70809.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08415; match to protein family HMM TIGR01733.
  
  
 0.600
PFL_2747
Sigma factor regulatory protein, FecR/PupR family; Identified by match to protein family HMM PF04773.
 
 
 0.586
PFL_3484
Putative sigma factor regulatory protein; Identified by similarity to SP:P23485.
 
 
 0.577
PFL_0989
Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to PIR:S46356; match to protein family HMM PF04773.
 
   0.557
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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