STRINGSTRING
PFL_5711 PFL_5711 creC creC creB creB PFL_0391 PFL_0391 PFL_0392 PFL_0392 rtcR rtcR PFL_5233 PFL_5233 PFL_2304 PFL_2304 PFL_4790 PFL_4790 PFL_2647 PFL_2647 PFL_4791 PFL_4791
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5711Inner membrane protein, CreD family; Identified by match to protein family HMM PF06123. (458 aa)    
Predicted Functional Partners:
creC
Sensor histidine kinase CreC; Identified by similarity to SP:P08401; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
   
 0.928
creB
DNA-binding response regulator CreB; Identified by similarity to SP:P08368; similarity to SP:P30846; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
   
 0.732
PFL_0391
Putative membrane protein.
  
     0.720
PFL_0392
Conserved hypothetical protein.
  
     0.609
rtcR
Sigma-54 dependent transcriptional regulator RtcR; Identified by similarity to SP:P38035; match to protein family HMM PF00158; match to protein family HMM PF06956; match to protein family HMM PF07728.
  
     0.583
PFL_5233
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
    0.581
PFL_2304
RtcB family protein; Identified by similarity to SP:P46850; match to protein family HMM PF01139.
  
     0.547
PFL_4790
Integral membrane protein; Identified by match to protein family HMM PF01944.
  
     0.531
PFL_2647
Conserved hypothetical protein.
   
    0.530
PFL_4791
Putative membrane protein.
  
     0.516
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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