STRINGSTRING
PFL_5714 PFL_5714 rimK rimK PFL_1858 PFL_1858 PFL_1857 PFL_1857 creC creC creB creB PFL_5715 PFL_5715 PFL_5711 PFL_5711
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
PFL_5714Conserved hypothetical protein; Identified by match to protein family HMM PF05618. (166 aa)    
Predicted Functional Partners:
rimK
Ribosomal protein S6 modification protein; Identified by match to protein family HMM PF02655; match to protein family HMM PF08443; match to protein family HMM TIGR00768.
 
     0.769
PFL_1858
Putative membrane protein; Klk.
 
    0.732
PFL_1857
alpha-L-glutamate ligase-related protein; Identified by match to protein family HMM TIGR02291.
 
     0.709
creC
Sensor histidine kinase CreC; Identified by similarity to SP:P08401; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
       0.647
creB
DNA-binding response regulator CreB; Identified by similarity to SP:P08368; similarity to SP:P30846; match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.647
PFL_5715
Acyltransferase; Identified by match to protein family HMM PF01553.
       0.505
PFL_5711
Inner membrane protein, CreD family; Identified by match to protein family HMM PF06123.
       0.494
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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