PFL_5735 protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PFL_5735

Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355. (431 aa)

Predicted Functional Partners:

PFL_5734

0.969

PFL_5741

0.930

soxD

0.906

soxG

0.902

PFL_5737

0.901

PFL_5740

0.885

soxB

0.871

PFL_5739

0.864

soxA

0.841

antB

0.772

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_5734	PFL_5735	PFL_5734	PFL_5735	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	0.969
PFL_5734	PFL_5737	PFL_5734	PFL_5737	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	Putative electron transfer flavoprotein, beta subunit; Identified by similarity to SP:P94550; match to protein family HMM PF01012.	0.914
PFL_5734	PFL_5739	PFL_5734	PFL_5739	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF02754.	0.903
PFL_5734	PFL_5740	PFL_5734	PFL_5740	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	Oxidoreductase, FAD/FMN dependent; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992.	0.884
PFL_5734	PFL_5741	PFL_5734	PFL_5741	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	Conserved hypothetical protein.	0.890
PFL_5734	antB	PFL_5734	PFL_0758	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	Anthranilate 1,2-dioxygenase, small subunit; Identified by similarity to GB:AAC34814.1; match to protein family HMM PF00866; match to protein family HMM TIGR03231.	0.408
PFL_5734	soxA	PFL_5734	PFL_5726	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	Sarcosine oxidase, alpha subunit; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372; Belongs to the GcvT family.	0.914
PFL_5734	soxB	PFL_5734	PFL_5728	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	Sarcosine oxidase, beta subunit; Identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373.	0.727
PFL_5734	soxD	PFL_5734	PFL_5727	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	Sarcosine oxidase, delta subunit; Identified by similarity to SP:Q46336; match to protein family HMM PF04267; match to protein family HMM TIGR01374.	0.779
PFL_5734	soxG	PFL_5734	PFL_5725	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	Sarcosine oxidase, gamma subunit; Identified by similarity to SP:Q46338; match to protein family HMM PF04268; match to protein family HMM TIGR01375.	0.775
PFL_5735	PFL_5734	PFL_5735	PFL_5734	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	0.969
PFL_5735	PFL_5737	PFL_5735	PFL_5737	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Putative electron transfer flavoprotein, beta subunit; Identified by similarity to SP:P94550; match to protein family HMM PF01012.	0.901
PFL_5735	PFL_5739	PFL_5735	PFL_5739	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF02754.	0.864
PFL_5735	PFL_5740	PFL_5735	PFL_5740	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Oxidoreductase, FAD/FMN dependent; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992.	0.885
PFL_5735	PFL_5741	PFL_5735	PFL_5741	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Conserved hypothetical protein.	0.930
PFL_5735	antB	PFL_5735	PFL_0758	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Anthranilate 1,2-dioxygenase, small subunit; Identified by similarity to GB:AAC34814.1; match to protein family HMM PF00866; match to protein family HMM TIGR03231.	0.772
PFL_5735	soxA	PFL_5735	PFL_5726	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Sarcosine oxidase, alpha subunit; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372; Belongs to the GcvT family.	0.841
PFL_5735	soxB	PFL_5735	PFL_5728	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Sarcosine oxidase, beta subunit; Identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373.	0.871
PFL_5735	soxD	PFL_5735	PFL_5727	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Sarcosine oxidase, delta subunit; Identified by similarity to SP:Q46336; match to protein family HMM PF04267; match to protein family HMM TIGR01374.	0.906
PFL_5735	soxG	PFL_5735	PFL_5725	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Sarcosine oxidase, gamma subunit; Identified by similarity to SP:Q46338; match to protein family HMM PF04268; match to protein family HMM TIGR01375.	0.902

page 1 of 5

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About