STRINGSTRING
PFL_5741 PFL_5741 PFL_5740 PFL_5740 PFL_5742 PFL_5742 PFL_5737 PFL_5737 PFL_5739 PFL_5739 PFL_5735 PFL_5735 PFL_0584 PFL_0584 soxG soxG PFL_5738 PFL_5738 PFL_5734 PFL_5734 soxD soxD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5741Conserved hypothetical protein. (176 aa)    
Predicted Functional Partners:
PFL_5740
Oxidoreductase, FAD/FMN dependent; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992.
 
  
 0.980
PFL_5742
Dipeptidase, M19 family; Identified by match to protein family HMM PF01244.
 
  
 0.963
PFL_5737
Putative electron transfer flavoprotein, beta subunit; Identified by similarity to SP:P94550; match to protein family HMM PF01012.
 
    0.961
PFL_5739
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF02754.
 
    0.946
PFL_5735
Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.
 
    0.930
PFL_0584
Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF08497.
  
  
 0.910
soxG
Sarcosine oxidase, gamma subunit; Identified by similarity to SP:Q46338; match to protein family HMM PF04268; match to protein family HMM TIGR01375.
 
    0.908
PFL_5738
Putative electron transfer flavoprotein, alpha subunit; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.
 
    0.908
PFL_5734
Glycine betaine catabolism B; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.
 
    0.890
soxD
Sarcosine oxidase, delta subunit; Identified by similarity to SP:Q46336; match to protein family HMM PF04267; match to protein family HMM TIGR01374.
 
    0.887
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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