PFL_5769 protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PFL_5769

Identified by match to protein family HMM PF01523. (480 aa)

Predicted Functional Partners:

PFL_5770

0.954

pmbA

0.843

PFL_5771

0.695

dbpA

0.456

betA

0.449

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_5769	PFL_5770	PFL_5769	PFL_5770	Identified by match to protein family HMM PF01523.	Conserved hypothetical protein.	0.954
PFL_5769	PFL_5771	PFL_5769	PFL_5771	Identified by match to protein family HMM PF01523.	Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.	0.695
PFL_5769	betA	PFL_5769	PFL_5768	Identified by match to protein family HMM PF01523.	Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.	0.449
PFL_5769	dbpA	PFL_5769	PFL_5772	Identified by match to protein family HMM PF01523.	ATP-independent RNA helicase DbpA; Identified by similarity to SP:P21693; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family.	0.456
PFL_5769	pmbA	PFL_5769	PFL_0905	Identified by match to protein family HMM PF01523.	PmbA protein; Identified by similarity to SP:P0AFK0; match to protein family HMM PF01523.	0.843
PFL_5770	PFL_5769	PFL_5770	PFL_5769	Conserved hypothetical protein.	Identified by match to protein family HMM PF01523.	0.954
PFL_5770	PFL_5771	PFL_5770	PFL_5771	Conserved hypothetical protein.	Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.	0.695
PFL_5770	betA	PFL_5770	PFL_5768	Conserved hypothetical protein.	Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.	0.449
PFL_5770	dbpA	PFL_5770	PFL_5772	Conserved hypothetical protein.	ATP-independent RNA helicase DbpA; Identified by similarity to SP:P21693; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family.	0.456
PFL_5771	PFL_5769	PFL_5771	PFL_5769	Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.	Identified by match to protein family HMM PF01523.	0.695
PFL_5771	PFL_5770	PFL_5771	PFL_5770	Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.	Conserved hypothetical protein.	0.695
PFL_5771	dbpA	PFL_5771	PFL_5772	Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.	ATP-independent RNA helicase DbpA; Identified by similarity to SP:P21693; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family.	0.515
betA	PFL_5769	PFL_5768	PFL_5769	Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.	Identified by match to protein family HMM PF01523.	0.449
betA	PFL_5770	PFL_5768	PFL_5770	Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.	Conserved hypothetical protein.	0.449
dbpA	PFL_5769	PFL_5772	PFL_5769	ATP-independent RNA helicase DbpA; Identified by similarity to SP:P21693; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family.	Identified by match to protein family HMM PF01523.	0.456
dbpA	PFL_5770	PFL_5772	PFL_5770	ATP-independent RNA helicase DbpA; Identified by similarity to SP:P21693; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family.	Conserved hypothetical protein.	0.456
dbpA	PFL_5771	PFL_5772	PFL_5771	ATP-independent RNA helicase DbpA; Identified by similarity to SP:P21693; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family.	Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.	0.515
pmbA	PFL_5769	PFL_0905	PFL_5769	PmbA protein; Identified by similarity to SP:P0AFK0; match to protein family HMM PF01523.	Identified by match to protein family HMM PF01523.	0.843

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About