STRINGSTRING
PFL_5775 PFL_5775 PFL_2708 PFL_2708 PFL_3337 PFL_3337 PFL_0366 PFL_0366 PFL_1821 PFL_1821 PFL_5515 PFL_5515 PFL_2979 PFL_2979 PFL_4192 PFL_4192 PFL_1903 PFL_1903 PFL_1109 PFL_1109 PFL_5871 PFL_5871
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5775Conserved hypothetical protein. (245 aa)    
Predicted Functional Partners:
PFL_2708
Periplasmic amino acid-binding protein-related protein.
  
     0.732
PFL_3337
Conserved hypothetical protein.
  
     0.729
PFL_0366
Conserved hypothetical protein.
  
     0.686
PFL_1821
Conserved hypothetical protein.
  
     0.673
PFL_5515
Conserved hypothetical protein.
  
     0.665
PFL_2979
Conserved hypothetical protein.
  
     0.659
PFL_4192
Conserved hypothetical protein.
  
     0.603
PFL_1903
Conserved hypothetical protein.
  
     0.536
PFL_1109
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02285.
  
     0.526
PFL_5871
HDOD domain protein; Identified by match to protein family HMM PF08668.
  
     0.451
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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