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PFL_5780 PFL_5780 PFL_0468 PFL_0468 algG algG PFL_5874 PFL_5874 algX algX algK algK algL algL PFL_1015 PFL_1015 PFL_1280 PFL_1280 PFL_4792 PFL_4792 PFL_3209 PFL_3209
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
PFL_5780Putative alginate lyase; Identified by match to protein family HMM PF08787. (223 aa)    
Predicted Functional Partners:
PFL_0468
Transporter, CPA2 family; Identified by match to protein family HMM PF00999.
  
     0.763
algG
poly(beta-D-mannuronate) C5 epimerase AlgG; Identified by similarity to SP:Q51371.
 
  
 0.754
PFL_5874
Conserved hypothetical protein.
  
   
 0.722
algX
Alginate biosynthesis protein AlgX; Identified by similarity to GB:AAA91126.1.
 
  
 0.719
algK
Alginate biosynthesis protein AlgK; Identified by similarity to GB:AAC38141.1; match to protein family HMM PF08238.
 
  
 0.715
algL
Alginate lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
  
   
 0.703
PFL_1015
Alginate biosynthesis protein AlgJ; Identified by similarity to SP:O52197.
 
  
 0.698
PFL_1280
Conserved hypothetical protein.
  
     0.682
PFL_4792
Conserved hypothetical protein.
  
     0.681
PFL_3209
Protease inhibitor Inh; Identified by match to protein family HMM PF02974.
  
 
 0.646
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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