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PFL_5787 PFL_5787 metK metK PFL_5135 PFL_5135 PFL_1947 PFL_1947 PFL_6017 PFL_6017 chpC chpC PFL_0710 PFL_0710 PFL_0975 PFL_0975 metH metH PFL_1645 PFL_1645 PFL_5272 PFL_5272
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5787Transcriptional regulator, ArsR family/methyltransferase domain protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF08241; match to protein family HMM PF08242. (331 aa)    
Predicted Functional Partners:
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
  
 0.841
PFL_5135
Conserved hypothetical protein.
  
     0.745
PFL_1947
Conserved hypothetical protein.
  
     0.740
PFL_6017
Conserved hypothetical protein.
  
     0.720
chpC
Chemosensory protein ChpC; Identified by similarity to GB:AAC23933.1; match to protein family HMM PF01584.
  
   
 0.659
PFL_0710
Copper-exporting ATPase; Identified by similarity to SP:P73241; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.652
PFL_0975
YebG family protein; Identified by similarity to SP:P0ACY9; match to protein family HMM PF07130.
  
     0.624
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.615
PFL_1645
HPt domain protein; Identified by match to protein family HMM PF01627.
  
     0.591
PFL_5272
Conserved hypothetical protein.
  
     0.590
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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