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PFL_5790 PFL_5790 PFL_0039 PFL_0039 PFL_0160 PFL_0160 PFL_1160 PFL_1160 PFL_2227 PFL_2227 ligA-2 ligA-2 PFL_0295 PFL_0295 PFL_5286 PFL_5286 PFL_0620 PFL_0620 PFL_0044 PFL_0044 PFL_3634 PFL_3634
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PFL_5790Conserved hypothetical protein; Identified by similarity to SP:P42616; match to protein family HMM PF06476. (131 aa)    
Predicted Functional Partners:
PFL_0039
Conserved hypothetical protein; Identified by match to protein family HMM PF05957.
 
    0.956
PFL_0160
Conserved hypothetical protein; Identified by match to protein family HMM PF06097.
  
    0.794
PFL_1160
Putative lipoprotein.
  
    0.765
PFL_2227
Conserved hypothetical protein.
  
     0.682
ligA-2
NAD-dependent DNA ligase adenylation domain protein; Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily.
 
     0.627
PFL_0295
Putative phospholipid-binding domain/LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF04972.
  
    0.614
PFL_5286
Putative phospholipid-binding domain protein; Identified by match to protein family HMM PF04972.
  
    0.610
PFL_0620
Phosphate starvation-inducible protein PsiF; Identified by similarity to SP:P0AFM4; match to protein family HMM PF07769.
  
    0.605
PFL_0044
Conserved hypothetical protein; Identified by match to protein family HMM PF06649.
  
     0.579
PFL_3634
Outer membrane autotransporter barrel domain protein; Identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414.
  
     0.576
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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