STRINGSTRING
PFL_5791 PFL_5791 PFL_5918 PFL_5918 PFL_3405 PFL_3405 PFL_5238 PFL_5238 PFL_3925 PFL_3925 PFL_5293 PFL_5293 PFL_5418 PFL_5418 PFL_5422 PFL_5422 PFL_1916 PFL_1916 wapP wapP PFL_0521 PFL_0521
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5791Putative cytochrome c; Identified by similarity to SP:P00149; match to protein family HMM PF01322. (149 aa)    
Predicted Functional Partners:
PFL_5918
Conserved hypothetical protein.
  
    0.736
PFL_3405
Conserved hypothetical protein; Identified by match to protein family HMM PF08980.
  
     0.718
PFL_5238
Conserved hypothetical protein.
  
     0.704
PFL_3925
Conserved hypothetical protein; Identified by match to protein family HMM PF04357.
 
     0.610
PFL_5293
Putative membrane protein.
  
     0.601
PFL_5418
Conserved hypothetical protein.
  
     0.580
PFL_5422
Conserved hypothetical protein.
  
     0.579
PFL_1916
Conserved hypothetical protein.
  
     0.576
wapP
Putative heptose kinase WapP; Identified by similarity to GB:AAG08393.1; match to protein family HMM PF06293.
  
     0.568
PFL_0521
Identified by match to protein family HMM PF02585.
  
     0.564
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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