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PFL_5831 PFL_5831 PFL_5830 PFL_5830 alaS alaS gshB gshB tonB3 tonB3 pyrB pyrB pyrR pyrR pyrC-2 pyrC-2 miaA miaA PFL_0562 PFL_0562 recJ recJ
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
PFL_5831Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (145 aa)    
Predicted Functional Partners:
PFL_5830
Conserved hypothetical protein; Identified by similarity to GB:AAG15555.1; match to protein family HMM PF02622; Belongs to the UPF0301 (AlgH) family.
  
  
 0.946
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.672
gshB
Glutathione synthase; Identified by similarity to SP:P04425; match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM PF08443; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.
 
  
 0.658
tonB3
Type IV pilus associated protein TonB3; See Shirley and Lamont (PMID: 19592589) for more information; identified by similarity to GB:AAG03795.1; match to protein family HMM TIGR01352.
  
    0.615
pyrB
Aspartate carbamoyltransferase; Identified by similarity to SP:P56585; match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
    0.592
pyrR
Putative PyrR bifunctional protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.
  
    0.581
pyrC-2
Dihydroorotase, multifunctional complex type; Identified by similarity to SP:Q59712; match to protein family HMM PF01979; match to protein family HMM TIGR00857.
  
    0.580
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
    0.575
PFL_0562
ATPase, YjeE family; Identified by similarity to SP:P0AF69; match to protein family HMM PF02367; match to protein family HMM TIGR00150.
 
   
 0.463
recJ
single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.
 
   
 0.461
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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