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pilT pilT pilD pilD gspF gspF pilC pilC pilM pilM pilQ pilQ gspG gspG pilA pilA PFL_1775 PFL_1775 PFL_5838 PFL_5838 pilO_2 pilO_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
pilTTwitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (344 aa)    
Predicted Functional Partners:
pilD
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.829
gspF
General secretion pathway protein F; Identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120.
 
  
 0.810
pilC
Type IV pilus biogenesis protein PilC; Identified by similarity to GB:AAA25733.1; match to protein family HMM PF00482.
 
  
 0.810
pilM
Type IV pilus biogenesis protein PilM; See Martin et. al. 1995 (PMID: 7565110) for characterization in PAO1; identified by similarity to GB:AAG08429.1; match to protein family HMM TIGR01175.
 
   
 0.768
pilQ
Type IV pilus biogenesis protein PilQ; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.
 
   
 0.693
gspG
General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.
 
  
 0.680
pilA
Type IV pilus protein PilA; Identified by similarity to SP:P04739; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532; Belongs to the N-Me-Phe pilin family.
 
   
 0.636
PFL_1775
DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
 
   
 0.604
PFL_5838
Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.539
pilO_2
Type IV pilus biogenesis protein PilO; Identified by similarity to GB:AAA87404.1; match to protein family HMM PF04350.
 
  
 0.511
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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