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kptA kptA PFL_5821 PFL_5821 PFL_3007 PFL_3007 PFL_3008 PFL_3008 rtcB rtcB PFL_2087 PFL_2087 rdgB rdgB PFL_5847 PFL_5847 PFL_5844 PFL_5844 PFL_5846 PFL_5846 PFL_2304 PFL_2304
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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kptARNA 2'-phosphotransferase, KptA family; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (182 aa)    
Predicted Functional Partners:
PFL_5821
Conserved hypothetical protein; Identified by match to protein family HMM PF08719; match to protein family HMM TIGR02464.
 
     0.674
PFL_3007
Conserved hypothetical protein.
  
     0.658
PFL_3008
Conserved hypothetical protein.
 
     0.628
rtcB
Conserved hypothetical protein; Identified by match to protein family HMM PF01139; Belongs to the RtcB family.
 
   
 0.610
PFL_2087
Release factor H-coupled RctB family protein; Identified by match to protein family HMM PF01139; match to protein family HMM TIGR03073.
 
   
 0.555
rdgB
Non-canonical purine NTP pyrophosphatase RdgB; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
       0.544
PFL_5847
Conserved hypothetical protein.
       0.542
PFL_5844
Conserved hypothetical protein.
       0.535
PFL_5846
Putative coproporphyrinogen dehydrogenase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.535
PFL_2304
RtcB family protein; Identified by similarity to SP:P46850; match to protein family HMM PF01139.
 
   
 0.534
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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