STRINGSTRING
PFL_5861 PFL_5861 PFL_5862 PFL_5862 PFL_5858 PFL_5858 PFL_5859 PFL_5859 PFL_5860 PFL_5860 ftsX ftsX PFL_4565 PFL_4565 PFL_4278 PFL_4278 hemF hemF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5861Identified by match to protein family HMM PF00561. (333 aa)    
Predicted Functional Partners:
PFL_5862
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
       0.802
PFL_5858
Peptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.
       0.555
PFL_5859
Peptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.
       0.555
PFL_5860
RNA methyltransferase, RsmD family; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family.
       0.555
ftsX
Putative cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
     0.426
PFL_4565
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02246.
  
    0.414
PFL_4278
Arylesterase; Identified by similarity to SP:Q07792; match to protein family HMM PF00657.
 
   
 0.405
hemF
Coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
  
    0.403
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.