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PFL_5863 PFL_5863 rhdA rhdA PFL_0863 PFL_0863 PFL_1609 PFL_1609 glpE glpE cysH cysH PFL_4152 PFL_4152 iscS iscS cysI_1 cysI_1 cysI_2 cysI_2 PFL_2219 PFL_2219
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5863Identified by match to protein family HMM PF00581. (284 aa)    
Predicted Functional Partners:
rhdA
Thiosulfate sulfurtransferase; Identified by similarity to SP:P52197; match to protein family HMM PF00581.
  
  
 
0.925
PFL_0863
Flavodoxin/oxidoreductase NAD binding domain protein; Identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF03929.
    
 0.925
PFL_1609
Identified by match to protein family HMM PF00155.
 
 
 0.925
glpE
Thiosulfate sulfurtransferase; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
   
 0.924
cysH
Adenylylsulfate reductase, thioredoxin dependent; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
    
 0.920
PFL_4152
Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.
  
 0.918
iscS
Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
 0.918
cysI_1
Sulfite reductase (NADPH) hemoprotein, beta-component; Identified by similarity to GB:AAC46385.1; match to protein family HMM PF01077; match to protein family HMM PF03460.
    
 0.914
cysI_2
Sulfite reductase (NADPH) hemoprotein, beta-component; Identified by similarity to GB:AAC46385.1; match to protein family HMM PF01077; match to protein family HMM PF03460.
    
 0.914
PFL_2219
Conserved hypothetical protein; Identified by similarity to GB:ABR57225.1.
    
 0.911
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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