STRINGSTRING
calB calB PFL_5867 PFL_5867 PFL_5866 PFL_5866 PFL_5864 PFL_5864 PFL_4005 PFL_4005 phaD phaD PFL_5863 PFL_5863 PFL_4413 PFL_4413
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
calBConiferyl aldehyde dehydrogenase; Identified by similarity to GB:CAA06926.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (476 aa)    
Predicted Functional Partners:
PFL_5867
Oxidoreductase, GMC family; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199.
 
  
 0.805
PFL_5866
Conserved hypothetical protein.
 
     0.803
PFL_5864
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
  
 0.800
PFL_4005
Shikimate 5-dehydrogenase/quinate 5-dehydrogenase family protein; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501.
      
 0.575
phaD
Transcriptional regulator PhaD; Identified by similarity to GB:BAB78722.1; match to protein family HMM PF00440.
 
  
 0.570
PFL_5863
Identified by match to protein family HMM PF00581.
   
 
 0.476
PFL_4413
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00474; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
 
 0.438
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.