STRINGSTRING
PFL_5904 PFL_5904 PFL_5903 PFL_5903 PFL_5902 PFL_5902 ilvA_2 ilvA_2 PFL_4327 PFL_4327 rpiA rpiA PFL_0550 PFL_0550 PFL_3456 PFL_3456 PFL_5528 PFL_5528 PFL_1821 PFL_1821 PFL_3112 PFL_3112
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5904Conserved hypothetical protein. (142 aa)    
Predicted Functional Partners:
PFL_5903
Conserved hypothetical protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
     0.838
PFL_5902
Conserved hypothetical protein.
 
    
0.825
ilvA_2
Threonine ammonia-lyase, biosynthetic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
       0.673
PFL_4327
Conserved hypothetical protein.
  
     0.505
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.493
PFL_0550
HAMP domain protein; Identified by match to protein family HMM PF00672.
  
     0.476
PFL_3456
Conserved hypothetical protein.
  
     0.455
PFL_5528
Conserved hypothetical protein.
  
     0.455
PFL_1821
Conserved hypothetical protein.
  
     0.445
PFL_3112
Conserved hypothetical protein; Identified by similarity to GB:AAN68472.1; match to protein family HMM PF04237.
  
     0.405
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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