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PFL_5908 PFL_5908 inaA inaA PFL_0516 PFL_0516 PFL_0517 PFL_0517 PFL_4834 PFL_4834 waaP waaP wapP wapP PFL_1494 PFL_1494 PFL_0526 PFL_0526 PFL_0521 PFL_0521 waaG waaG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_5908SdiA-regulated domain protein; Identified by match to protein family HMM PF06977. (309 aa)    
Predicted Functional Partners:
inaA
InaA protein; Identified by similarity to SP:P27294; match to protein family HMM PF06293.
 
   
 0.783
PFL_0516
Lipopolysaccharide kinase, WaaP family; Identified by match to protein family HMM PF06293.
 
   
 0.774
PFL_0517
Conserved hypothetical protein.
 
     0.772
PFL_4834
Methyltransferase domain protein; Identified by match to protein family HMM PF08241.
  
   
 0.766
waaP
Lipopolysaccharide kinase WaaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
     0.765
wapP
Putative heptose kinase WapP; Identified by similarity to GB:AAG08393.1; match to protein family HMM PF06293.
  
     0.763
PFL_1494
SAM dependent methyltransferase; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.
  
   
 0.760
PFL_0526
O-antigen polymerase family protein/toluene tolerance protein; Identified by similarity to GB:AAD17955.1; match to protein family HMM PF04932.
 
     0.752
PFL_0521
Identified by match to protein family HMM PF02585.
  
     0.747
waaG
Lipopolysaccharide core biosynthesis protein WaaG; Identified by similarity to GB:AAD33103.1; match to protein family HMM PF00534.
  
     0.730
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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